Job status related command
- Waiting time:
Usesqueueto see estimated start dates assuming new jobs with higher priority are not submitted, and assuming that jobs run to the wall time given on submission.
squeue -a --start -j <job_id>
- Submitted jobs info:
Thescontrolcommand can be used to display information about submitted jobs, running jobs, and very recently completed jobs.
scontrol show job <job_id>
- Finished jobs info:
To see job usage for a finished job, issue:
seff <job_id>
- Running job info:
to list status info for a currently running job, issue:
sstat --format=AveCPU,AvePages,AveRSS,AveVMSize,JobID -j <jobid> --allsteps
- More details when connet to the nodes
ssh nova056 top
Partition status
- All partition info:
To report the status of the available partitions and nodes, issue:
sinfo
- More details:
For more details on partitions limits, issue:
scontrol show partitions
Group info
sprio can be used to display a breakdown of the priority components for each job, e.g. sshare shows the two level fair-share hierachy data.
Install R packages
module load python/anaconda
conda create -p /workspace/[username]/myEnvironment anaconda
conda install p /workspace/[username]/myEnvironment anaconda your-module-name
- If modlue not exist: try to search it in conda with
conda search -t conda your-module-name. - If
nltk.downloadfunction is needed, usepython -m nltk.downloader <collection|package|all>
source activate /workspace/[username]/myEnvironment
External Links
see more tutorials here.